RNAcentral

class openomics.database.annotation.RNAcentral(path='ftp://ftp.ebi.ac.uk/pub/databases/RNAcentral/current_release/', file_resources=None, col_rename={'GO terms': 'go_id', 'ensembl_gene_id': 'gene_id', 'external id': 'transcript_id', 'gene symbol': 'gene_name'}, species=9606, npartitions=0, verbose=False)

Bases: openomics.database.base.Database

Attributes Summary

COLUMNS_RENAME_DICT

Methods Summary

load_dataframe(file_resources[, npartitions])

param file_resources

Attributes Documentation

COLUMNS_RENAME_DICT = {'GO terms': 'go_id', 'ensembl_gene_id': 'gene_id', 'external id': 'transcript_id', 'gene symbol': 'gene_name'}

Methods Documentation

load_dataframe(file_resources, npartitions=None)

Parameters

• file_resources –

• npartitions –