TANRIC¶
-
class
openomics.database.annotation.
TANRIC
(path, file_resources=None, col_rename=None, npartitions=0, verbose=False)[source][source]¶ Bases:
openomics.database.base.Database
Methods Summary
get_expressions
(genes_index)Preprocess LNCRNA expression file obtained from TANRIC MDAnderson, and replace ENSEMBL gene ID to HUGO gene names (HGNC).
load_dataframe
(file_resources[, npartitions])- param file_resources
Methods Documentation
-
get_expressions
(genes_index)[source][source]¶ Preprocess LNCRNA expression file obtained from TANRIC MDAnderson, and replace ENSEMBL gene ID to HUGO gene names (HGNC). This function overwrites the GenomicData.process_expression_table() function which processes TCGA-Assembler data. TANRIC LNCRNA expression values are log2 transformed
- Parameters
genes_index –