Sequence databases

openomics.database.sequence Module

Classes

Database(path[, file_resources, col_rename, …])	This is a base class used to instantiate an external Database given a a set of files from either local files or URLs.
GENCODE([path, file_resources, col_rename, …])	Loads the GENCODE database from https://www.gencodegenes.org/ .
MirBase([path, file_resources, sequence, …])
SequenceDatabase([replace_U2T])	Provides a series of methods to extract sequence data from SequenceDataset.

Class Inheritance Diagram