OpenOmics 0.8.8 documentation

OpenOmics 0.8.8 documentation

Using OpenOmics Python API

Installation
Getting started
Loading a multi-omics dataset
External annotation databases
Creating biological interaction networks
Preparing data for downstream analyses

API Reference

MultiOmics data
Annotation interfaces
- Annotatable
- Database
Genomic databases
Sequence databases
Interaction databases
- BioGRID
- GeneMania
- Interactions
- LncBase
- LncRNA2Target
- LncReg
- MiRTarBase
- NPInter
- STRING
- StarBase
- TargetScan
- lncRInter
- lncRNome
Disease databases
- DisGeNet
- DiseaseAssociation
- HMDD
- LncRNADisease
- MalaCards
- OMIM
Ontology databases
Utilities
- get_pkg_data_filename
- read_gtf

MISC

Frequently Asked Questions (FAQ)

Contributing and releases

Contributing
Release history

Creating biological interaction networks¶

Preparing data for downstream analyses

External annotation databases

Copyright © 2019, Nhat Tran | Built with Sphinx and @pradyunsg's Furo theme. | Show Source