MirBase

class openomics.database.sequence.MirBase(path='ftp://mirbase.org/pub/mirbase/CURRENT/', file_resources=None, sequence='hairpin', species='Homo sapiens', species_id=9606, col_rename=None, npartitions=0, replace_U2T=True)

Bases: openomics.database.sequence.SequenceDatabase

Methods Summary

get_sequences([index, omic, agg_sequences])	param index
load_dataframe(file_resources[, npartitions])	param file_resources
read_fasta(fasta_file, replace_U2T[, …])	param fasta_file

Methods Documentation

get_sequences(index='gene_name', omic=None, agg_sequences='all', **kwargs)

Parameters

• index –

• omic –

• agg_sequences –

• **kwargs –

load_dataframe(file_resources, npartitions=None)

Parameters

• file_resources –

• npartitions –

read_fasta(fasta_file, replace_U2T, npartitions=None)

Parameters

• fasta_file –

• replace_U2T –

• npartitions –