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OpenOmics 0.8.9 documentation
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OpenOmics 0.8.9 documentation

Using OpenOmics Python API

  • Installation
  • Getting started
  • Loading a multi-omics dataset
  • External annotation databases
  • Creating biological interaction networks
  • Preparing data for downstream analyses

API Reference

  • MultiOmics data
    • ClinicalData
    • CopyNumberVariation
    • DNAMethylation
    • Expression
    • LncRNA
    • MessengerRNA
    • MicroRNA
    • MultiOmics
    • Protein
    • SomaticMutation
  • Annotation interfaces
    • Database
    • Annotatable
  • Genomic databases
    • ProteinAtlas
    • GTEx
    • NONCODE
    • EnsemblGenes
    • EnsemblGeneSequences
    • EnsemblTranscriptSequences
    • EnsemblSNP
    • EnsemblSomaticVariation
    • TANRIC
  • Sequence databases
    • GENCODE
    • UniProt
    • MirBase
    • RNAcentral
  • Interaction databases
    • STRING
    • GeneMania
    • IntAct
    • BioGRID
    • MiRTarBase
    • LncBase
    • TargetScan
    • TarBase
    • LncReg
    • LncRNA2Target
    • lncRNome
    • NPInter
    • RNAInter
    • StarBase
  • Disease databases
    • DiseaseAssociation
    • MalaCards
    • DisGeNet
    • HMDD
    • LncRNADisease
  • Ontology databases
    • GeneOntology
    • UniProtGOA
    • InterPro
    • HumanPhenotypeOntology
  • Utilities

MISC

  • Frequently Asked Questions (FAQ)

Contributing and releases

  • Contributing
  • Release history
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MicroRNA#

class openomics.MicroRNA(data, transpose, gene_index=None, usecols=None, gene_level=None, sample_level='sample_index', transform_fn=None, dropna=False, npartitions=None, cohort_name=None)[source][source]#

Bases: openomics.transcriptomics.Expression, openomics.database.base.Annotatable

Methods Summary

name()

Methods Documentation

classmethod name()[source][source]#
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