Interaction databases

openomics.database.interaction Module

Classes

STRING([path, file_resources, species_id, ...])	Loads the STRING database from https://string-db.org/ .
GeneMania(path[, file_resources, ...])	Loads the GeneMania database from .
IntAct(path, file_resources[, ...])
BioGRID([path, file_resources, ...])	Loads the BioGRID database from https://thebiogrid.org .
MiRTarBase([path, file_resources, ...])	Loads the database from .
LncBase([path, file_resources, ...])	Loads the LncBase database from http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=lncbasev2%2Findex .
TargetScan([path, file_resources, ...])	Loads the TargetScan database from "http://www.targetscan.org/" .
TarBase([path, file_resources, ...])
LncReg(path, file_resources[, ...])	Loads the database from .
LncRNA2Target([path, file_resources, ...])	Loads the database from .
lncRNome(path, file_resources[, ...])	Loads the lncRNome database from .
NPInter([path, file_resources, ...])	Loads the NPInter database from http://bigdata.ibp.ac.cn/npinter4/ .
RNAInter([path, file_resources, ...])
StarBase(path, file_resources[, ...])	Loads the database from .

Class Inheritance Diagram