GTEx#
- class openomics.database.annotation.GTEx(path='https://storage.googleapis.com/gtex_analysis_v8/rna_seq_data/', file_resources=None, col_rename=None, blocksize=0, verbose=False)[source][source]#
Bases:
openomics.database.base.Database
Loads the database from https://www.gtexportal.org/home/ .
Default path: “https://storage.googleapis.com/gtex_analysis_v8/rna_seq_data/” . Default file_resources: {
“GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct”: “GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct.gz”, “GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt”: “https://storage.googleapis.com/gtex_analysis_v8/annotations/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt”, “GTEx_Analysis_2017-06-05_v8_RSEMv1.3.0_transcript_tpm.gct”: “GTEx_Analysis_2017-06-05_v8_RSEMv1.3.0_transcript_tpm.gct.gz”,
}
Attributes Summary
Methods Summary
load_dataframe
(file_resources[, blocksize])- param file_resources
Attributes Documentation
Methods Documentation