Genomic databases#

openomics.database.annotation Module#

Classes#

ProteinAtlas([path, file_resources, ...])

Loads the database from .

GTEx([path, file_resources, col_rename, ...])

Loads the database from https://www.gtexportal.org/home/ .

NONCODE([path, file_resources, col_rename, ...])

Loads the NONCODE database from http://noncode.org .

EnsemblGenes([biomart, attributes, host, ...])

EnsemblGeneSequences([biomart, attributes, ...])

EnsemblTranscriptSequences([biomart, ...])

EnsemblSNP([biomart, attributes, host, ...])

EnsemblSomaticVariation([biomart, ...])

TANRIC(path[, file_resources, col_rename, ...])

Class Inheritance Diagram#

Inheritance diagram of openomics.database.annotation.ProteinAtlas, openomics.database.annotation.GTEx, openomics.database.annotation.NONCODE, openomics.database.annotation.EnsemblGenes, openomics.database.annotation.EnsemblGeneSequences, openomics.database.annotation.EnsemblTranscriptSequences, openomics.database.annotation.EnsemblSNP, openomics.database.annotation.EnsemblSomaticVariation, openomics.database.annotation.TANRIC