LncRNA2Target#
- class openomics.database.interaction.LncRNA2Target(path='http://123.59.132.21/lncrna2target/data/', file_resources=None, edge_attr=None, filters=None, directed=True, relabel_nodes=None, version='high_throughput', **kwargs)[source][source]#
Bases:
openomics.database.interaction.InteractionsLoads the database from .
Default path: . Default file_resources: {
“”: “”, “”: “”, “”: “”,
}
Methods Summary
load_network(file_resources, ...[, blocksize])Handles data processing from file_resources to a Pandas DataFrame which contain edgelist data, then constructs and return a NetworkX Graph.
load_network_high_throughput(file_resources)load_network_low_throughput(file_resources)Methods Documentation
- load_network(file_resources, source_col_name, target_col_name, edge_attr, directed, filters, blocksize=None)[source][source]#
Handles data processing from file_resources to a Pandas DataFrame which contain edgelist data, then constructs and return a NetworkX Graph. :param file_resources: a dict of file name and file path/object :param source_col_name: column name of the dataframe for source in the edge :type source_col_name: str :param target_col_name: column name of the dataframe for target in the edge :type target_col_name: str :param edge_attr: list of str for column data to include in each edge :type edge_attr: list :param directed: True to return a DiGraph(), else Graph() :type directed: bool :param filters: A dict of {column name: column values} to filter the dataframe :param blocksize ():
- Returns
a NetworkX Graph or DiGraph
- Return type
network