Ontology databases#

openomics.database.ontology Module#

`GeneOntology`([path, species, ...])	Loads the GeneOntology database from http://geneontology.org .
`UniProtGOA`([path, species, file_resources, ...])	Loads the GeneOntology database from https://www.ebi.ac.uk/GOA/ .
`InterPro`([path, index_col, keys, ...])	Default parameters path="https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/" file_resources = { "entry.list": "entry.list", "protein2ipr.dat.gz": "protein2ipr.dat.gz", "interpro2go": "interpro2go", "ParentChildTreeFile.txt": "ParentChildTreeFile.txt", }
`HumanPhenotypeOntology`([path, ...])	Loads the Human Phenotype Ontology database from https://hpo.jax.org/app/ .