TANRIC#

class openomics.database.annotation.TANRIC(path, file_resources=None, col_rename=None, blocksize=0, verbose=False)[source][source]#

Bases: openomics.database.base.Database

Methods Summary

get_expressions(genes_index)

Preprocess LNCRNA expression file obtained from TANRIC MDAnderson, and replace ENSEMBL gene ID to HUGO gene names (HGNC).

load_dataframe(file_resources[, blocksize])

param file_resources

Methods Documentation

get_expressions(genes_index)[source][source]#

Preprocess LNCRNA expression file obtained from TANRIC MDAnderson, and replace ENSEMBL gene ID to HUGO gene names (HGNC). This function overwrites the GenomicData.process_expression_table() function which processes TCGA-Assembler data. TANRIC LNCRNA expression values are log2 transformed

Parameters: genes_index –

load_dataframe(file_resources, blocksize=None)[source][source]#

Parameters

file_resources –
blocksize –