HMDD#

class openomics.database.disease.HMDD(path='http://www.cuilab.cn/static/hmdd3/data/', file_resources=None, col_rename={'disease': 'disease_associations', 'mir': 'gene_name'}, **kwargs)[source][source]#

Bases: openomics.database.disease.DiseaseAssociation

Loads the HMDD database from “http://www.cuilab.cn/static/hmdd3” .

Default path: “http://www.cuilab.cn/static/hmdd3/data/” . Default file_resources: {

“alldata.txt”: “alldata.txt”,

}

Attributes Summary

Methods Summary

load_dataframe(file_resources[, blocksize])

param file_resources

Attributes Documentation

COLUMNS_RENAME_DICT = {'disease': 'disease_associations', 'mir': 'gene_name'}[source]#

Methods Documentation

load_dataframe(file_resources, blocksize=None)[source][source]#
Parameters
  • file_resources

  • blocksize