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OpenOmics 0.8.9 documentation

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OpenOmics 0.8.9 documentation

Using OpenOmics Python API

Installation
Getting started
Loading a multi-omics dataset
External annotation databases
Creating biological interaction networks
Preparing data for downstream analyses

API Reference

MultiOmics data
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Annotation interfaces
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- Database
- Annotatable
Genomic databases
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Sequence databases
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- GENCODE
- UniProt
- MirBase
- RNAcentral
Interaction databases
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- STRING
- GeneMania
- IntAct
- BioGRID
- MiRTarBase
- LncBase
- TargetScan
- TarBase
- LncReg
- LncRNA2Target
- lncRNome
- NPInter
- RNAInter
- StarBase
Disease databases
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Ontology databases
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Utilities

MISC

Frequently Asked Questions (FAQ)

Contributing and releases

Contributing
Release history

v: latest

Versions: latest; stable

Downloads: html

On Read the Docs: Project Home; Builds

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Creating biological interaction networks#

Preparing data for downstream analyses

External annotation databases

Copyright © 2019, Nhat Tran

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