MultiOmics data

openomics Package

Functions

join(a, *p)

Join two or more pathname components, inserting '/' as needed.

Classes

ClinicalData(file, patient_index[, columns])	This class manages the clinical data tables to handle the patient's phenotype data, as well as the treatment, and sample data associated to each patient.
CopyNumberVariation(data, transpose, gene_index)
DNAMethylation(data, transpose, gene_index)
Expression(data, transpose[, gene_index, ...])	This class handles importing of any quantitative omics data that is in a table format (e.g.
LncRNA(data, transpose[, gene_index, ...])
MessengerRNA(data, transpose[, gene_index, ...])
MicroRNA(data, transpose[, gene_index, ...])
MultiOmics(cohort_name[, omics_data])	A data object which holds multiple -omics data for a single clinical cohort.
Protein(data, transpose[, gene_index, ...])
SomaticMutation(data, transpose, gene_index)

Class Inheritance Diagram