Welcome to OpenOmics’s documentation!

PyPI version Documentation Status OpenOmics codecov

This Python package provide a series of tools to integrate and query the genomics, transcriptomics, proteomics, and clinical data (aka, the multi-omics data). With scalable data-frame manipulation tools, OpenOmics facilitates the common coding tasks when preparing data for RNA-seq bioinformatics analysis.

Features

  • Provides a bioinformatics workflow to generate integrative results from multi-omics data.

  • Facilitates integration of various bio-databases, multi-omics expression, genomics, and clinical data.

  • Highly flexible to different data types and missing data.

  • Provides researchers with means to consistently store and explore their experimental datasets.

  • Enables scalable performance with parallel computing, while easily configurable to deploy on both single machine and a cluster.

Table of Content

Contributing and releases