Hide navigation sidebar

Hide table of contents sidebar

Toggle site navigation sidebar

OpenOmics 0.8.9 documentation

Toggle table of contents sidebar

OpenOmics 0.8.9 documentation

Using OpenOmics Python API

Installation
Getting started
Loading a multi-omics dataset
External annotation databases
Creating biological interaction networks
Preparing data for downstream analyses

API Reference

MultiOmics data
Toggle child pages in navigation
Annotation interfaces
Toggle child pages in navigation
- Database
- Annotatable
Genomic databases
Toggle child pages in navigation
Sequence databases
Toggle child pages in navigation
- GENCODE
- UniProt
- MirBase
- RNAcentral
Interaction databases
Toggle child pages in navigation
- STRING
- GeneMania
- IntAct
- BioGRID
- MiRTarBase
- LncBase
- TargetScan
- TarBase
- LncReg
- LncRNA2Target
- lncRNome
- NPInter
- RNAInter
- StarBase
Disease databases
Toggle child pages in navigation
Ontology databases
Toggle child pages in navigation
Utilities

MISC

Frequently Asked Questions (FAQ)

Contributing and releases

Contributing
Release history

v: latest

Versions: latest; stable

Downloads: html

On Read the Docs: Project Home; Builds

Toggle table of contents sidebar

get_pkg_data_filename#

Copyright © 2019, Nhat Tran

Made with Sphinx and @pradyunsg's Furo